Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs10891508 chr11:112983809 G/A 0.00019 174 25.87 19.72 36.73 KM Plot
PCPG rs10906667 chr10:14448568 C/T 1.63E-6 178 10.3 25.42 25.87 KM Plot
PCPG rs1091424 chr17:3257629 A/C 0.000226 171 18.1 25.87 26.88 KM Plot
PCPG rs1091590 chr17:3255028 A/G 0.000226 171 18.1 25.87 26.88 KM Plot
PCPG rs10927051 chr1:243805936 G/C 0.000319 170 25 25.53 18.35 KM Plot
PCPG rs10927076 chr1:243958293 A/G 0.000144 174 24.52 28.3 19.87 KM Plot
PCPG rs10929269 chr2:239097423 A/G 3.21E-5 171 29.43 16.97 13.22 KM Plot
PCPG rs10935209 chr3:136639099 A/T 0.000296 176 20.2 27.27 23.03 KM Plot
PCPG rs10950054 chr7:66315664 C/T 0.000223 177 24.85 29.57 33.17 KM Plot
PCPG rs10958336 chr8:53841318 G/A 5.03E-5 172 24.47 27.27 20 KM Plot
PCPG rs10972736 chr9:36122297 C/T 4.62E-5 178 20.48 24.23 25.53 KM Plot
PCPG rs10993911 chr9:136935697 C/G 5.12E-7 176 25.6 21.55 31.47 KM Plot
PCPG rs10993924 chr9:136943067 C/T 1.82E-5 178 28.57 23.53 25.4 KM Plot
PCPG rs11017095 chr10:131932337 G/C 1.11E-16 173 25.47 27.22 3.17 KM Plot
PCPG rs11017096 chr10:131932670 T/C 1.11E-16 173 25.47 27.22 3.17 KM Plot